Detailed information of SNP:
|
SNP ID:
sf0416711616(Gbrowse)
Chromosome: chr04 Position: 16711616 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1317 | 72.44% | 27.56% |
| All Indica | 740 | 78.11% | 21.89% |
| All Japonica | 459 | 61.44% | 38.56% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 348 | 81.32% | 18.68% |
| Indica II | 192 | 71.88% | 28.12% |
| Indica Intermediate | 200 | 78.50% | 21.50% |
| Temperate Japonica | 314 | 74.20% | 25.80% |
| Tropical Japonica | 80 | 10.00% | 90.00% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416711616 | T->C | LOC_Os04g28520(LOC_Os04g28520.2) | INTRON |
| sf0416711616 | T->C | LOC_Os04g28520(LOC_Os04g28520.1) | INTRON |