Detailed information of SNP:
|
SNP ID:
sf0416758961(Gbrowse)
Chromosome: chr04 Position: 16758961 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 97.97% | 2.03% |
| All Indica | 792 | 99.24% | 0.76% |
| All Japonica | 470 | 95.32% | 4.68% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 321 | 93.46% | 6.54% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416758961 | G->A | INTERGENIC | None |