Detailed information of SNP:
|
SNP ID:
sf0416782540(Gbrowse)
Chromosome: chr04 Position: 16782540 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1244 | 98.55% | 1.45% |
| All Indica | 686 | 97.38% | 2.62% |
| All Japonica | 442 | 100.00% | 0.00% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 317 | 96.85% | 3.15% |
| Indica II | 188 | 99.47% | 0.53% |
| Indica Intermediate | 181 | 96.13% | 3.87% |
| Temperate Japonica | 299 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416782540 | A->G | LOC_Os04g28630(LOC_Os04g28630.1) | INTRON |