Detailed information of SNP:
SNP ID:
sf0416807036(Gbrowse)
Chromosome: chr04 Position: 16807036 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1413 | 97.03% | 2.97% |
All Indica | 795 | 94.84% | 5.16% |
All Japonica | 496 | 99.80% | 0.20% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 373 | 89.81% | 10.19% |
Indica II | 211 | 100.00% | 0.00% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 93 | 98.92% | 1.08% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0416807036 | G->A | INTERGENIC | None |