Detailed information of SNP:
|
SNP ID:
sf0416849368(Gbrowse)
Chromosome: chr04 Position: 16849368 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 87.78% | 12.22% |
| All Indica | 791 | 88.87% | 11.13% |
| All Japonica | 493 | 85.19% | 14.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416849368 | C->T | INTERGENIC | None |