Detailed information of SNP:
|
SNP ID:
sf0416867707(Gbrowse)
Chromosome: chr04 Position: 16867707 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 94.65% | 5.35% |
| All Indica | 787 | 90.60% | 9.40% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 98.09% | 1.91% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 208 | 71.63% | 28.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416867707 | C->T | LOC_Os04g28770(LOC_Os04g28770.1) | INTRON |
| sf0416867707 | C->T | LOC_Os04g28770(LOC_Os04g28770.1) | SNPs that disrupt splice sites |