Detailed information of SNP:
|
SNP ID:
sf0416951246(Gbrowse)
Chromosome: chr04 Position: 16951246 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 92.30% | 7.70% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 496 | 80.24% | 19.76% |
| Aus | 54 | 87.04% | 12.96% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 82.09% | 17.91% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416951246 | G->A | LOC_Os04g28880(LOC_Os04g28880.1) | Non-Synonymous SNP |