Detailed information of SNP:
|
SNP ID:
sf0416961496(Gbrowse)
Chromosome: chr04 Position: 16961496 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1333 | 96.17% | 3.83% |
| All Indica | 751 | 99.07% | 0.93% |
| All Japonica | 465 | 98.28% | 1.72% |
| Aus | 64 | 50.00% | 50.00% |
| Indica I | 356 | 100.00% | 0.00% |
| Indica II | 198 | 96.46% | 3.54% |
| Indica Intermediate | 197 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 97.75% | 2.25% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416961496 | T->C | INTERGENIC | None |