Detailed information of SNP:
|
SNP ID:
sf0416996725(Gbrowse)
Chromosome: chr04 Position: 16996725 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 96.70% | 3.30% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 477 | 90.99% | 9.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 87.77% | 12.23% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416996725 | C->A | INTERGENIC | None |