Detailed information of SNP:
|
SNP ID:
sf0417071610(Gbrowse)
Chromosome: chr04 Position: 17071610 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 77.77% | 22.23% |
| All Indica | 798 | 87.97% | 12.03% |
| All Japonica | 496 | 59.48% | 40.52% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 75.40% | 24.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 46.41% | 53.59% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417071610 | C->T | INTERGENIC | None |