Detailed information of SNP:
|
SNP ID:
sf0417086931(Gbrowse)
Chromosome: chr04 Position: 17086931 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 95.54% | 4.46% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 493 | 92.70% | 7.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417086931 | G->A | LOC_Os04g29090(LOC_Os04g29090.1) | Synonymous |