Detailed information of SNP:
|
SNP ID:
sf0417095883(Gbrowse)
Chromosome: chr04 Position: 17095883 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 79.73% | 20.27% |
| All Indica | 798 | 88.72% | 11.28% |
| All Japonica | 495 | 61.41% | 38.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 77.01% | 22.99% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 48.95% | 51.05% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417095883 | G->T | INTERGENIC | None |