Detailed information of SNP:
|
SNP ID:
sf0417104233(Gbrowse)
Chromosome: chr04 Position: 17104233 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 95.88% | 4.12% |
| All Indica | 735 | 92.79% | 7.21% |
| All Japonica | 457 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 339 | 84.37% | 15.63% |
| Indica II | 195 | 100.00% | 0.00% |
| Indica Intermediate | 201 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417104233 | G->A | LOC_Os04g29110(LOC_Os04g29110.1) | INTRON |