Detailed information of SNP:
|
SNP ID:
sf0417173309(Gbrowse)
Chromosome: chr04 Position: 17173309 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1298 | 96.07% | 3.93% |
| All Indica | 731 | 93.16% | 6.84% |
| All Japonica | 449 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 341 | 85.34% | 14.66% |
| Indica II | 196 | 100.00% | 0.00% |
| Indica Intermediate | 194 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 100.00% | 0.00% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417173309 | G->A | LOC_Os04g29250(LOC_Os04g29250.1) | Synonymous |