Detailed information of SNP:
|
SNP ID:
sf0417181789(Gbrowse)
Chromosome: chr04 Position: 17181789 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 95.46% | 4.54% |
| All Indica | 792 | 92.17% | 7.83% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417181789 | G->A | LOC_Os04g29270(LOC_Os04g29270.1) | Non-Synonymous SNP |