Detailed information of SNP:
|
SNP ID:
sf0417193662(Gbrowse)
Chromosome: chr04 Position: 17193662 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 98.30% | 1.70% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 490 | 95.51% | 4.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417193662 | A->G | INTERGENIC | None |