Detailed information of SNP:
|
SNP ID:
sf0417195415(Gbrowse)
Chromosome: chr04 Position: 17195415 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1230 | 95.04% | 4.96% |
| All Indica | 694 | 94.67% | 5.33% |
| All Japonica | 424 | 95.52% | 4.48% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 332 | 90.96% | 9.04% |
| Indica II | 178 | 100.00% | 0.00% |
| Indica Intermediate | 184 | 96.20% | 3.80% |
| Temperate Japonica | 295 | 100.00% | 0.00% |
| Tropical Japonica | 69 | 94.20% | 5.80% |
| Japonica Intermediate | 60 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 35 | 91.43% | 8.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417195415 | G->A | LOC_Os04g29290(LOC_Os04g29290.1) | Non-Synonymous SNP |