Detailed information of SNP:
|
SNP ID:
sf0417207945(Gbrowse)
Chromosome: chr04 Position: 17207945 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 74.03% | 25.97% |
| All Indica | 776 | 84.79% | 15.21% |
| All Japonica | 472 | 53.18% | 46.82% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 362 | 75.41% | 24.59% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 318 | 57.23% | 42.77% |
| Tropical Japonica | 90 | 48.89% | 51.11% |
| Japonica Intermediate | 64 | 39.06% | 60.94% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417207945 | T->C | LOC_Os04g29310(LOC_Os04g29310.1) | INTRON |