Detailed information of SNP:
|
SNP ID:
sf0417209414(Gbrowse)
Chromosome: chr04 Position: 17209414 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 59.96% | 40.04% |
| All Indica | 778 | 33.03% | 66.97% |
| All Japonica | 478 | 98.74% | 1.26% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 366 | 40.44% | 59.56% |
| Indica II | 205 | 34.15% | 65.85% |
| Indica Intermediate | 207 | 18.84% | 81.16% |
| Temperate Japonica | 323 | 99.38% | 0.62% |
| Tropical Japonica | 88 | 95.45% | 4.55% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417209414 | C->T | LOC_Os04g29310(LOC_Os04g29310.1) | INTRON |