Detailed information of SNP:
|
SNP ID:
sf0417272695(Gbrowse)
Chromosome: chr04 Position: 17272695 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 77.74% | 22.26% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 494 | 62.15% | 37.85% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 49.85% | 50.15% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417272695 | A->G | INTERGENIC | None |