Detailed information of SNP:
|
SNP ID:
sf0417345650(Gbrowse)
Chromosome: chr04 Position: 17345650 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 83.43% | 16.57% |
| All Indica | 795 | 90.06% | 9.94% |
| All Japonica | 494 | 69.23% | 30.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 80.38% | 19.62% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 332 | 59.94% | 40.06% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417345650 | T->C | LOC_Os04g29469(LOC_Os04g29469.1) | INTRON |