Detailed information of SNP:
SNP ID:
sf0417352762(Gbrowse)
Chromosome: chr04 Position: 17352762 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1413 | 98.58% | 1.42% |
All Indica | 795 | 100.00% | 0.00% |
All Japonica | 495 | 95.96% | 4.04% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 100.00% | 0.00% |
Indica II | 210 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 333 | 98.80% | 1.20% |
Tropical Japonica | 94 | 91.49% | 8.51% |
Japonica Intermediate | 68 | 88.24% | 11.76% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0417352762 | C->A | LOC_Os04g29469(LOC_Os04g29469.1) | Synonymous |