Detailed information of SNP:
|
SNP ID:
sf0417354194(Gbrowse)
Chromosome: chr04 Position: 17354194 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 98.30% | 1.70% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 488 | 95.49% | 4.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 98.48% | 1.52% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417354194 | C->T | LOC_Os04g29469(LOC_Os04g29469.1) | Synonymous |