Detailed information of SNP:
|
SNP ID:
sf0417367319(Gbrowse)
Chromosome: chr04 Position: 17367319 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1232 | 91.31% | 8.69% |
| All Indica | 701 | 87.30% | 12.70% |
| All Japonica | 416 | 96.39% | 3.61% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 325 | 75.38% | 24.62% |
| Indica II | 191 | 97.38% | 2.62% |
| Indica Intermediate | 185 | 97.84% | 2.16% |
| Temperate Japonica | 274 | 94.89% | 5.11% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 98.11% | 1.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417367319 | G->A | LOC_Os04g29520(LOC_Os04g29520.1) | Non-Synonymous SNP |