Detailed information of SNP:
|
SNP ID:
sf0417377391(Gbrowse)
Chromosome: chr04 Position: 17377391 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 97.17% | 2.83% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 495 | 94.34% | 5.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 91.92% | 8.08% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417377391 | T->A | INTERGENIC | None |