Detailed information of SNP:
|
SNP ID:
sf0417401273(Gbrowse)
Chromosome: chr04 Position: 17401273 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 93.14% | 6.86% |
| All Indica | 775 | 88.65% | 11.35% |
| All Japonica | 477 | 99.58% | 0.42% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 360 | 77.22% | 22.78% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 82 | 98.78% | 1.22% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417401273 | T->C | INTERGENIC | None |