Detailed information of SNP:
|
SNP ID:
sf0417419235(Gbrowse)
Chromosome: chr04 Position: 17419235 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 82.32% | 17.68% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 493 | 65.92% | 34.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 80.75% | 19.25% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 54.38% | 45.62% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417419235 | G->C | INTERGENIC | None |