Detailed information of SNP:
|
SNP ID:
sf0417468463(Gbrowse)
Chromosome: chr04 Position: 17468463 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 77.13% | 22.87% |
| All Indica | 786 | 64.76% | 35.24% |
| All Japonica | 490 | 97.55% | 2.45% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 366 | 44.26% | 55.74% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417468463 | G->A | INTERGENIC | None |