Detailed information of SNP:
|
SNP ID:
sf0417472586(Gbrowse)
Chromosome: chr04 Position: 17472586 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 92.29% | 7.71% |
| All Indica | 791 | 95.07% | 4.93% |
| All Japonica | 491 | 87.98% | 12.02% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 369 | 92.14% | 7.86% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 90 | 71.11% | 28.89% |
| Japonica Intermediate | 66 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417472586 | G->A | INTERGENIC | None |