Detailed information of SNP:
|
SNP ID:
sf0417518018(Gbrowse)
Chromosome: chr04 Position: 17518018 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 94.21% | 5.79% |
| All Indica | 758 | 90.63% | 9.37% |
| All Japonica | 489 | 99.80% | 0.20% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 369 | 91.87% | 8.13% |
| Indica II | 197 | 86.29% | 13.71% |
| Indica Intermediate | 192 | 92.71% | 7.29% |
| Temperate Japonica | 327 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417518018 | C->T | LOC_Os04g29700(LOC_Os04g29700.1) | Synonymous |