Detailed information of SNP:
|
SNP ID:
sf0417541292(Gbrowse)
Chromosome: chr04 Position: 17541292 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 72.83% | 27.17% |
| All Indica | 779 | 87.16% | 12.84% |
| All Japonica | 496 | 49.19% | 50.81% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 202 | 73.27% | 26.73% |
| Indica Intermediate | 202 | 86.14% | 13.86% |
| Temperate Japonica | 334 | 59.58% | 40.42% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417541292 | A->T | INTERGENIC | None |