Detailed information of SNP:
|
SNP ID:
sf0417586212(Gbrowse)
Chromosome: chr04 Position: 17586212 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 84.10% | 15.90% |
| All Indica | 777 | 74.65% | 25.35% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 367 | 86.10% | 13.90% |
| Indica II | 205 | 59.51% | 40.49% |
| Indica Intermediate | 205 | 69.27% | 30.73% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417586212 | C->T | INTERGENIC | None |