Detailed information of SNP:
|
SNP ID:
sf0417588692(Gbrowse)
Chromosome: chr04 Position: 17588692 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 85.21% | 14.79% |
| All Indica | 777 | 76.96% | 23.04% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 365 | 86.30% | 13.70% |
| Indica II | 209 | 64.11% | 35.89% |
| Indica Intermediate | 203 | 73.40% | 26.60% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417588692 | G->A | LOC_Os04g29800(LOC_Os04g29800.1) | Synonymous |