Detailed information of SNP:
|
SNP ID:
sf0417600675(Gbrowse)
Chromosome: chr04 Position: 17600675 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 70.11% | 29.89% |
| All Indica | 788 | 84.77% | 15.23% |
| All Japonica | 495 | 45.45% | 54.55% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 209 | 72.25% | 27.75% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417600675 | G->C | INTERGENIC | None |