Detailed information of SNP:
|
SNP ID:
sf0417603769(Gbrowse)
Chromosome: chr04 Position: 17603769 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 97.08% | 2.92% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 484 | 92.98% | 7.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 96.68% | 3.32% |
| Tropical Japonica | 87 | 78.16% | 21.84% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417603769 | C->T | LOC_Os04g29820(LOC_Os04g29820.1) | Non-Synonymous SNP |