Detailed information of SNP:
|
SNP ID:
sf0417612106(Gbrowse)
Chromosome: chr04 Position: 17612106 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1321 | 69.80% | 30.20% |
| All Indica | 745 | 60.13% | 39.87% |
| All Japonica | 465 | 86.24% | 13.76% |
| Aus | 59 | 57.63% | 42.37% |
| Indica I | 342 | 32.16% | 67.84% |
| Indica II | 202 | 91.09% | 8.91% |
| Indica Intermediate | 201 | 76.62% | 23.38% |
| Temperate Japonica | 308 | 85.06% | 14.94% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417612106 | G->A | LOC_Os04g29830(LOC_Os04g29830.1) | INTRON |