Detailed information of SNP:
|
SNP ID:
sf0417620352(Gbrowse)
Chromosome: chr04 Position: 17620352 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 97.34% | 2.66% |
| All Indica | 717 | 95.12% | 4.88% |
| All Japonica | 487 | 100.00% | 0.00% |
| Aus | 58 | 100.00% | 0.00% |
| Indica I | 311 | 92.93% | 7.07% |
| Indica II | 203 | 99.01% | 0.99% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417620352 | C->T | INTERGENIC | None |