Detailed information of SNP:
|
SNP ID:
sf0417625900(Gbrowse)
Chromosome: chr04 Position: 17625900 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 80.88% | 19.12% |
| All Indica | 796 | 89.07% | 10.93% |
| All Japonica | 493 | 64.10% | 35.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 80.38% | 19.62% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 332 | 52.41% | 47.59% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417625900 | G->A | INTERGENIC | None |