Detailed information of SNP:
|
SNP ID:
sf0417629804(Gbrowse)
Chromosome: chr04 Position: 17629804 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 63.00% | 37.00% |
| All Indica | 773 | 75.81% | 24.19% |
| All Japonica | 488 | 38.73% | 61.27% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 71.39% | 28.61% |
| Indica II | 200 | 76.00% | 24.00% |
| Indica Intermediate | 199 | 83.92% | 16.08% |
| Temperate Japonica | 333 | 45.65% | 54.35% |
| Tropical Japonica | 90 | 30.00% | 70.00% |
| Japonica Intermediate | 65 | 15.38% | 84.62% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417629804 | A->G | INTERGENIC | None |