Detailed information of SNP:
|
SNP ID:
sf0417631488(Gbrowse)
Chromosome: chr04 Position: 17631488 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 75.76% | 24.24% |
| All Indica | 795 | 83.52% | 16.48% |
| All Japonica | 497 | 58.95% | 41.05% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417631488 | A->G | LOC_Os04g29870(LOC_Os04g29870.1) | INTRON |