Detailed information of SNP:
|
SNP ID:
sf0417647683(Gbrowse)
Chromosome: chr04 Position: 17647683 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 96.21% | 3.79% |
| All Indica | 729 | 96.84% | 3.16% |
| All Japonica | 495 | 94.75% | 5.25% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 96.46% | 3.54% |
| Indica II | 205 | 99.02% | 0.98% |
| Indica Intermediate | 157 | 94.90% | 5.10% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417647683 | A->T | LOC_Os04g29890(LOC_Os04g29890.1) | INTRON |