Detailed information of SNP:
|
SNP ID:
sf0417668400(Gbrowse)
Chromosome: chr04 Position: 17668400 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 92.67% | 7.33% |
| All Indica | 795 | 99.25% | 0.75% |
| All Japonica | 488 | 82.38% | 17.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 89 | 43.82% | 56.18% |
| Japonica Intermediate | 65 | 52.31% | 47.69% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417668400 | G->A | INTERGENIC | None |