Detailed information of SNP:
|
SNP ID:
sf0417691820(Gbrowse)
Chromosome: chr04 Position: 17691820 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 87.73% | 12.27% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 496 | 75.00% | 25.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417691820 | T->C | LOC_Os04g29940(LOC_Os04g29940.1) | INTRON |