Detailed information of SNP:
|
SNP ID:
sf0417695542(Gbrowse)
Chromosome: chr04 Position: 17695542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 55.68% | 44.32% |
| All Indica | 796 | 60.55% | 39.45% |
| All Japonica | 490 | 46.33% | 53.67% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 212 | 29.25% | 70.75% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 331 | 57.40% | 42.60% |
| Tropical Japonica | 91 | 16.48% | 83.52% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417695542 | C->T | LOC_Os04g29950(LOC_Os04g29950.1) | INTRON |