Detailed information of SNP:
|
SNP ID:
sf0417700384(Gbrowse)
Chromosome: chr04 Position: 17700384 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 67.94% | 32.06% |
| All Indica | 799 | 62.70% | 37.30% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417700384 | T->C | INTERGENIC | None |