Detailed information of SNP:
|
SNP ID:
sf0417704879(Gbrowse)
Chromosome: chr04 Position: 17704879 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 52.65% | 47.35% |
| All Indica | 795 | 49.69% | 50.31% |
| All Japonica | 479 | 59.29% | 40.71% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 372 | 12.90% | 87.10% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 320 | 50.62% | 49.38% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417704879 | C->T | LOC_Os04g29960(LOC_Os04g29960.1) | Synonymous |