Detailed information of SNP:
|
SNP ID:
sf0417733496(Gbrowse)
Chromosome: chr04 Position: 17733496 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 95.31% | 4.69% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 490 | 87.96% | 12.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 88.32% | 11.68% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417733496 | G->A | INTERGENIC | None |