Detailed information of SNP:
|
SNP ID:
sf0417746705(Gbrowse)
Chromosome: chr04 Position: 17746705 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1235 | 85.91% | 14.09% |
| All Indica | 770 | 90.39% | 9.61% |
| All Japonica | 355 | 72.68% | 27.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 80.34% | 19.66% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 296 | 72.64% | 27.36% |
| Tropical Japonica | 31 | 96.77% | 3.23% |
| Japonica Intermediate | 28 | 46.43% | 53.57% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 33 | 90.91% | 9.09% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417746705 | T->C | INTERGENIC | None |