Detailed information of SNP:
|
SNP ID:
sf0417747042(Gbrowse)
Chromosome: chr04 Position: 17747042 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 87.73% | 12.27% |
| All Indica | 785 | 90.45% | 9.55% |
| All Japonica | 462 | 80.30% | 19.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 80.33% | 19.67% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 306 | 74.51% | 25.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 62 | 80.65% | 19.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417747042 | C->T | INTERGENIC | None |