Detailed information of SNP:
|
SNP ID:
sf0417821731(Gbrowse)
Chromosome: chr04 Position: 17821731 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 92.48% | 7.52% |
| All Indica | 780 | 94.62% | 5.38% |
| All Japonica | 494 | 89.47% | 10.53% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 201 | 88.06% | 11.94% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417821731 | T->G | INTERGENIC | None |